Also I did the tests the bike manual told me to do and everything checked out coils and ignition resistance so the manual says replace the spark units(ignitors)
Those are the weak points in these ignition I hear. I see used ones that say they’re in good shape on eBay.
For checking power, there is a black/white wire going into each coil. Take your multimeter on DC volts and use the red probe to probe the connector where that wire goes into the coil and put the black probe on a ground or battery negative terminal. With the key ON and kill switch set to RUN you should get about battery voltage. Like 12 volts. It will be a little less, like if the battery reads 12.8 volts the coils might read 12.6 volts. That’s normal. Test each coil.
Same test for the spark units. Find the black/white wire that goes into the plug connector for them and test each one.
As for the green/yellow ground wire on your engine, it will most likely work that way but it’s not as designed by Honda. Also it looks a bit ugly. The stock place makes it more hidden. Also that wire looks a little thin. What gauge is it? Looks about 8awg? Should be at least 6awg. Lower the number, thicker the wire.
Wiring diagram:
http://manuals.sohc4.net/cb650/technical_reference/WD650.jpg