Hi , I just caught up with this thread again. I read it once before when you were polishing the caps and float bowls and gave it some time to see your progress, caught up with you at the lake with a bike that you think is road worthy that can't get over 50mph, poor compression test on one cylinder, no tires balanced, and the air screws have been giving you a hard time.
Now I want you to understand that I am not trying to be disrespectful to you in any way, if fact , I respect riders who want to build their machine the way they want to, but safety and the well being of that ride and rider really concerns me. Both can be lost in the same instant from things overlooked and I would like to help you find direction with this ride since right now it's not working right and you aren't happy with anything but the seat.
That being said . I would like to talk about some things on this thread that I see are missing that may help you to get this machine where you might want it to be. Otherwise you will be disinterested in it soon and end up getting rid of it
The carb clean up . carbs need to be perfectly clean on the inside more that polished on the outside in order to run correctly. didn't see any evidence that the carbs have been truly cleaned. That is always a problem and sounds like a big part of your bike's problem, the other part is that anyone who puts on pods and a new exhaust will ask others what jets would run better in that application, especially newbs you didn't ask. And do you have any idea if those carbs are in sync? Q. are any of the pipes cold and what's the plugs look like.
Compression - have you set the valves? that low compression could be from a valve not seating correctly..burnt,bent valve or broken spring, guide issues, seal issues,or seal lost by other internal damage. Or could be a broken ring, cylinder wall issue, or head gasket.
I think that you may need to order complete top end gaskets for the work that will be coming after you clean and sync those carbs, set those valves and check the ignition timing and find no improvement .But until then it's fuel , air and spark, proper amounts of each, at the right time.Don't forget to use your shop manual, the information you need is in there. If you don't get it , ask someone here about it, no shame in that, most folks are only too happy to help.