Yeah, I'm guessing most of that damage was done when the tire went flat, and wasn't the cause. I rode my Triumph Rocket III the 800 miles from my brothers place to mine in 2009, and thought the handling was pretty bad as it "wallowed" thru the bends in the Adelaide hills, but was nice and stable in a straight line. I didn't bother checking tire pressures because my brother had the local Triumph dealer prepare the bike for my ride home, and he (the dealer) assured me that he'd pumped the tyres up, filled the gas tank, charged the battery, etec etc.
I should have realised that he was full of sh1t when it almost ran out of fuel 5 miles from the dealership, but when I dropped it off at the Triumph dealer here in Melbourne the next weekend, the service manager told me that I had less than 10 psi in each tire.......... Those tyres (Metzlers) are still on the Rocket III 10 years and 8000 miles later, and still roadworthy. (just) I think I might invest in some new ones, apart from their age, on a big heavy bike like a Rocket III or a Harley, 8-10K miles is about the most you should expect from a set of tires before it's time for new rubber. Tires aren't cheap, but cheaper than an ambulance ride.