You could alter the trail by using a different fork offset with the triple trees. I believe you are using a Cognitomoto triple tree with the GSXR front. In selecting the offset, however, did you mention to Devin at Cognitomoto that you would be running a longer swingarm? If so, he may have already taken this into consideration. If not, Devin may let you exchange it for a different offset if needed. You should measure your fork offset, rake and trail and see how it compares to stock geometry.
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I bought the bike as is, with forks and swingarm installed, not running with carbs apart. I know that the PO dealt quite a bit with the guys at Cognito Moto. My plan is to get it running right first, get the carbs adjusted and then look into the geometry. That is something I don't have much experience with, so should be a fun learning exercise! Thanks for pointing it out!