Another method of measuring valve guide clearance to the valve is to measure the following:
1. The outer diameter (OD) of the valve stem
2. The inner diameter (ID) of the valve guide
Then subtract these two numbers to obtain the valve clearance.
Such as this:
Your rebuild manual calls out clearance via the dial gauge method. Those values are slightly different, since the angular movement of the stem inside the guide will be different than the actual clearance of the stem and guide. I would try your best to obtain the numbers via the method they have given you, but if it isn't working this is another method to try.