Was it level , if it wasn't that changes get way the neck looks.
I suspected the initial level test I did on the head was off because of a bump in the weld that wasn't allowing the level to sit flat against the head. Yesterday I put the font forks on and made sure the top of the frame where the shocks mount and the swing arm were both level, I measured the distance from the fork axels to the lower engine bolt mount and it was exactly 20" on both sides (which is the correct distance I found from another forum post, if it was less than the down tubes or neck would have to be bent.) The forks were also level vertically, I also centered the triple tree with the spine on the frame and checked the forks level horizontally in the lower, middle and top of the forks, which indicated level as well.
I measured the ends on the swing arm where the real wheel axels are mounted to the same lower engine mount bolts on the down tubes on both sides and they were both the same distance, which shows there's no twist in the vertical axis of the swing arm. So I think from all the measurements iv taken it looks ok across all axis.
I also measured the head holes to make sure they were not warped into an egg shape and they check out as well. I used a right angle to measure the triple tree too and that checks out.
everything looks symmetrical and level to me. Anything else I should look for before I start to build?
At this point I don't know what else to look for, and iI'm starting to get analysis paralysis.