When you have black smoke, first thing to check, is the air intake. Is there a forgotten cloth under the seat (partially) choking the air intake? Has the paper filter element become wet, either by water ingress or a messed up breather element under the air filter element? Could it be the air filter is at its end? In case of a foam filter, could it be you've overoiled it. When you've worked at the carbs, are the chokes still functioning as they should, or do they stay partially closed? Have you checked the little O-rings around the main jets are still in position and seal well.
BTW, I cannot imagine the setting of the air screws causing black smoke, even if they're set a full turn too rich.