Here's what I have done (and the problem existed before tune up, and I double checked all tune up specs--problem still exists):
Cam chain adjustment
Valve adjustment
Contact Breaker adjustment
Static Timing
Carb Synch (Bike will idle at 1000, 1100rpm)
Replaced 1/4 and 2/3 Coils
New plug resistors: NGK VD05F and SD05F
New plugs: all 4 ~.026 gap, NGK D8EA
New rectifier
New condensers
Oil change
My problem: Excessive backfire on deceleration, I suspect it is the unburnt fuel because I am running rich. On highway, fourth cylinder cuts out, loss of power in 5th gear. Once getting off highway, engine is running on cylinders 1,2,3. If the bike sits for a few minutes (still running, or not), the fourth cylinder will slowly start to get hot. Cylinders 1,2,3 get hot hot, #4 hot, but not as hot as 1,2,3. Exhaust smells like gas.
My suspicion is I am running rich, and for some reason the bike is being suffocated with gas in cylinder four when in 5th gear. Thus, the bike cannot handle sparking the gas, gets flooded or something?
I need to know where to go hunting next. Carburetor? Float level? Main jet sizes? Emulsion tube (whatever that is?) Needle position?