3rd time was the charm. I solved the mystery of why the release plate was so hard to get on and also think I have solved the overall issue, although I need to take it for a test ride to confirm.
The overall issue and the problem starting the bolts that hold in the lifter plate are probably related. I completely disassembled the clutch again and then reassembled. During disassembly I compared the new Barnett springs to the stockers. As you can see below, the Barnetts are quite a bit taller. I also paid very careful attention to make sure that the pressure plate part of the clutch was completely seated and I went back to the stock springs, although that might not have been necessary. If there appears to be any slippage I will swap out the springs later.
I think that it was not and so when I was tightening the release plate it was too tight, which was why the throw out bearing wasn't spinning free. This time when the 4 lifter plate nuts bottomed the bearing still spun.
I got everything together and was able to adjust everything and have a good long clutch pull.
I did buy a new, shorter Motion Pro cable from 4into1, but it is an inch or so too short, so the old cable will have to suffice. I gave the cover a nice polish yesterday, so it looks nice and pretty. I still need to remove and polish the alternator cover and the small cover over the front sprocket and then all the outer covers and valve cover will be done.
Later tonight I will replace the two cover screws with stripped heads and take it for a ride.