"Two of the sleeves in question are, for whatever reason, low in the block and do not seal to the head gasket."
This has been up before on this forum when sleeves are not correctly seated when mounting them.
They can pop-up when cylinder cools down. Important to press them down.
Surface decked flat with sleeves wrong. When running the engine warm sleeves will sink.
Here a photo of marked sleeve that was removed and back again. Cyl 4, all the other marked too.
The 970cc cylinder I have used 2022, a little bit over 10.000 km after that fix.
Changed head 2 times, last swap I fixed a leaking RCS base basket. Reused same gasket, just a very thin layer of high temp RTV on both sides, let it cure a few hours before assembly.
Last time I got cam better timed than before getting 3whp more than earlier 104.5whp. Pod clean might have helped to.
Redoing things can sometimes improve, not only repair.
I reused an MLS head gasket too so no extra costs for gaskets.
I tightened that one less when used before for a short period.