These days, it is not unusual to get some generic parts (like brake pads) that are not quite umm... exacting about adhering to Honda's 50-year-old specifications. This situation [edit] appears to me [/edit] to be one of those. The brake caliper, if it does not have a spacer screw for adjusting the non-moving pad's clearance from the rotor, will have to simply wear in the stationary pad to the minimum nominal clearance. This happens sometimes with the CB750F0/1 rear caliper: it has happened to me twice.
The OEM spec for the pad-to-rotor clearance for the non-powered pad is 0.1mm/0.004", if you have an adjuster for it. I usually set them a bit tighter, like 0.05mm/0.002" instead, as many of the rotors are not dead flat anymore, and this tighter adjustment will reduce the free-play in the brake lever.
I have had to 'reduce' the thickness of several brands of the pads (static pad side) in the past.