Time for a check-in. So, to make a long story short, it was my main bearings. I took my crank and my block to Cycle Xchange in Wisconsin to get looked at and balanced because this motor has always been pretty buzzy, and essentially if I would've run it any more, I probably would've ruined something. A balanced crank with new rod bearings and yellow crank bearings later (I had in green), I think I'm nearly ready to button this block up for the second time.
My experience with Threebond, while probably okay, wasn't the greatest, so for round number 2 I'm trying some Loctite 518 anaerobic sealer. In theory, because it only hardens in the lack of oxygen, any excess on the outside of the block can be wiped off, and any on the inside will get washed out by the oil. Plus I'll have plenty of time to get everything lined up.
I also got a couple of parts for my carburetors that, while not strictly necessary, I've wanted for a long time now.
Of course I had to goober up (rather good) carb sync to get them on, but I should probably re-do that anyway.
Plan is to get the block together in a day or two, then we'll worry about buttoning up the rest.