I would very much like to see photos.
The brakes weren't symmetrical when I did mine either, and I rode all over Washington State for a couple years like that. It was great. I never experienced any sort of uneven handling, or strange weight issues or leaning. Bike was awesome at freeway speeds and beyond.
Also, I didn't shim anything, so I'm not sure why anybody thinks that's necessary. I had to grind my speedo drive plate, but that was the extend of my suffering. I wish I knew what bike I got the longer hub bolts from. GL1000?
If you haven't bought your brake lines yet, I recommend looking for the type of braided lines that go from your (double) banjo bolt at the in-line brake switch, directly to the calipers. Don't faff around with those stupid bent metal tubes. That part can at least be symmetrical if you go with those sort of lines. I'll put a pic to illustrate what I mean. Good luck. Pics please?