Boots can be purchased as a separate item usually in a set of 4 from aftermarket sources, yet singley from Honda if still available. DSS has a US depot to sell these items who can supply the aftermarket ones for a reasonable price, also EBay likely too.
Any rubber sealant can be used to seal the loose ones, yet not super critical if they fit snug as they usually have a dual lip design covering both the inner and outer part of the airbox.