With just 20k miles on those bores, new rings will then work for a while, maybe 10K miles or so, in my experience. The #1 and #4 bores will be slightly egg-shaped now, which happened while the steel liners were destressing with the heating cycles and the increased airflow around the outside front corners of the cylinder fins. This one fact will prevent new, round rings from seating fully if they are just installed, but it will work well enough for casual riding. For the 100,000 mile future version, bore the cylinders to fit new pistons and rings, using 0.0008" piston clearance.
The cam cahin tunnel wear: I have seen that in engines that received the 'bad' aftermarket tensioner. It came (still does) with an incorrectly clearanced pivot bushing where it mounts at the base of the arm, and this burr (which is on both sides of the 'notch' that is cut to locate the oiler holes upward in the pivot tube) wore the center pivot tube so that the tensioner arm could wiggle left-and-right whenever the cam chain got a little bit loose. This then caused the chain to become very difficult (if not impossible) to properly adjust for tension, so it remained loose after adjustment. This causes teh wide wear on the front cam chain guide that you see in your parts now.
If you have the OEM tensioner arm, even an old, worn, OEM hard one, it actually works better than the new [off brand] version in most cases - heck, mine (OEM) went over 125k miles and still looks usable despite the top end being off 3 times (mostly to repair fin damage in various accidents I had)! The front chain guide can be either the aftermarket or the Honda version, and it will work fine if the tensioner roller and its pivot are correct. This left-right wandering of the tensioner roller (due to the quickly-loosened pivot) makes the chain attack the guide ridge in the center of the aftermarket rollers, causing the damage you are seeing there. The rubber was suspected for a while in the aftermarket tensioners, but I finally tracked the real problem down to the damage of the pivot bushing, caused by poor stamping of the 'notch' in the tensioner's arm at the pivot.
All this said: the cam chain ground up the rubber bits, so they should probably have ended up in the oil sump, under the pump, or in the pump's screen. The chain can't "hold" them inside of itself. The bits that made it back thru the scavenge pump could possibly have found their way into the pressure regulator of the pump, so I'd suggest removing those 2 plugs (regulator and check valve) and cleaning out the tunnels there, in case those bits might still be around. This can cause the oil system to lose pressure to the transmission and/or cause the oil tank to slowly drain thru the check valve from these points not being sealed well.