Perhaps it the brush marks that the pictures are showing..
I like the 0.0009 clearance you measured so I probably wouldn’t do any type of aggressive honing that would increase the diameter. Plateau honing usually uses a few passes with a finer grit to get the desired percentage. US Chrome and Millennium advertises such, but they specialize in chrome (hard) and nikasil bores. They do cast iron too.
Round and straight are important for long ring life too..