With the Transistor Ignition you can also just disconnect the condensors (if you suspect them bad) and run it that way. Mine is like that at present.
I normally recommend leaving them in for a couple of reasons: first, if an EMP went off in close proximity it might damage the box (although I seriously doubt it with the low impedance design I used) and then switching back to points would involve just unplugging the box and plugging the points (and condensors) back in, so you can get into traffic again, quickly. The other reason is: almost all of the occasions when someone has contacted me about misfire when the box was (just then) added has turned out to be bad condensors, from China. In just one case, it was due to a cracked female connector leading to one of the coils: it would run OK until the bike warmed up, then sputter.