I might suggest unplugging the 2-3 wires from the Ignition module and plug the wires back to the points directly to see if the 2-3 side will fire. The clue: turning on the key made them fire (that 'pop' you heard) which indicates the Transistor Ignition is working, but it's not 'seeing' the points. This can happen if the points are not fully "cured", especially those made after 2006. If this fixes it, I recommend then unplugging the other side from the box, too, and plug them back together: run the bike about 100 miles with the normal setup to cure the points, then re-plug the box back in.
The points made since 2006 or so are no longer tungsten, but only tungsten-plated copper pads instead. This makes a nice thermocouple, but a poor signal switch for transistors. What needs to happen is: the points must arc for a while to arc-weld the tungsten outer plating into the copper core of the points pad, then it will work normally. I'm seeing and hearing a lot about this since 2 years ago, with riders installing new points (regardless of brand) and then they get intermittent or troubling spark from the box. Once the points have properly arc'd themselves together, it works fine again.
The makers of these points had little choice but to do this because the tungsten market cratered more than 90% when CFL lightbulbs got big, and tungsten mines globally just closed up. Tungsten then became more than 200x as much (2000% price increases) in just 3 years' time, but it is the best metal suitable for arcing applications, like points. So, plating it over copper pads in switches, contactors (i.e. power relays), and points became the way to do it.