I use a heat gun on its lowest setting to warm the rubbers through. It massively increases their flexibility, until they cool. I used the flat piece of wood test, to make sure the inlet rubbers are mounted correctly on the head, properly aligned, then tighten their clips up. Carbs onto the inlet manifold rubbers next, then the airbox with the rubbers pre-installed is slid onto the back of the carbs, then tighten up the carb rubber to carb mounting clips, inlet side first, then airbox side. Keep checking all are nicely seated, more heat if useful. Finally I tighten the airbox to frame mounts.
I found the holes in the frame's airbox mounts were a couple of mm too far rearwards, causing a rearward tension on the rubbers, so I filed a slight oval in the bracket holes, to reduce that. I don't know what caused it. Might be replacement rubbers, or shrinkage in the rubbers over time.