Your old pistons were larger than stock if they measure at 59mm...if you are measuring with calipers then how much measurement error do you have? Stock is 58.5mm diameter...
What type of hone did you use and what did the cylinders measure after honing?
It is not uncommon for cylinders to have eccentric wear, honing alone cannot correct this issue.
Align boring the cylinders to reestablish the cylinder alignment can restore some lost power from the cylinders drifting during initial break in when the material around the liners allowed the cylinders not to remain in alignment with the crankshaft. The metal for the cylinder surround was not ideal. Align boring restores that lost power, it is a one time issue as after break-in the material surrounding the cylinder liners stabilizes.
I need to get back into the cylinder to measure the diameter after honing.
I used the typical stone hone -
https://www.common-motor.com/honda-motorcycle-cylinder-hone?srsltid=AfmBOopSlxKWhOVODCYMjrmYyyAUAF3GWs1BIFPhTn_cLwrNVXwY8FnIFrom what I've read though, the piston to bore clearance for these is supposed to be no more than 0.026mm. My naive self didn't measure the current clearance, but it certainly looks to be more than 0.026mm. Hence why I think there might be piston slapping.
The picture of those 3 bores does not show much in the way of honing marks. Remind us, what compression values did you get for each cylinder? Are you detecting any blow-by last the rings?
Apologies, I should've clarified - the pictures are of the same cylinder. I was attempting to display the front to back play of the piston to the bore. I could be wrong, but is that not way too much space? Hence my thought that there is piston slapping.
Before the rebuild, the compression was measured at the following:
- C1: 63psi
- C2 and C3: 60psi
- C4: 68psi
I still have to measure the compression after the piston and ring replacement, but each time I went into the engine, there was some sort of oil (and possibly water?) mixture. From what I've read, this could be due to the rings settling in and the engine needing to burn off the oil. I did go back in to re-align the rings to be oriented per the manuals instructions.