Ok, so I decided to replace the roller bearings on the two transmission shafts as well as I didn't fancy pulling it all apart again because I replaced the wrong bearing!
However, when re-assembling the countershaft, I have ended up with a spare thrust washer. I've checked and rechecked the parts book and everything is assembled as per the diagram. My suspicion is that the PO may have added it for some reason (it was a bit clunky to change the gears).
Additionally, the left over washer looks home made as the center hole is not circular - see pic attached.
My question is, is the parts diagram correct or is there another washer, and if so, where does it go ?