I can remove the fuse with my fingers, but no oxidation and the clips still seem to have a good grip on the fuse.
Oxidation on these clips can be transparent and still resistive. Pass current through a resistance an it generates heat. If they haven't been cleaned in the last 30 years, it has oxidation.
Contact pressure on the fuse also effects resistance. More pressure = less resistance = less heating.
If it's not the rectifier me thinks the next culprit might be the solid green wires (4 or 5 of them) behind the fuse block. Or that is, the green wires that come out of all the plastic connectors in the area of the fuse block, between the air box and the wiring panel, have all been soldered together.
Well, that's a hack. But, it seems unlikely to be causal. BTW, Green is the Honda standard for frame connection or battery NEG.
One of the green wires has a female end with a clear plastic covering around it and is not hooked up to anything.
That's normal. Some countries require a three terminal flasher for extra lighting. The US isn't one of them.
I guess I'm going to have to track down a good wiring diagram and figure out where those are supposed to go.
Absolutely! Wire diagram is an essential tool!
Since you have hacked green wires, check the main frame connection up at the coil mounts. Clean those connections and inspect the green wire for signs of melting. When that one goes melty, it usually damages others in the harness on the frame spine leading back the rectifier.
You can always measure the rectifier with a DMM that has a diode test position, if you want to allay doubts about it.
Cheers,