At this stage, the Yamaha R6 front fork assembly is pretty much mounted and ready to go, but decisions about the front wheel and brakes still need to be sorted out.
As mentioned earlier, using a Yamaha R6 front wheel and brakes would be easy and get this bike back on the road right away, but I'm after that classic vintage look, so let's try using the stock CB550 hub and a spoke wheel first.
To do that, there are a couple of architectural issues to sort out. First, the R6 front forks use a large 22mm flex free axle to keep the wheel following a straight and precise path but the CB550 hub has a 15mm axle so larger bearings will have to be accommodated.
Secondly, motorcycles with spoked wheels use brake calipers with pistons on the outboard side only due to spoke clearance issues, and I want modern braking performance with only one disc to keep the stock look, so a 4 (opposing) piston caliper and floating disc would be ideal.
Another consideration is mounting a modern 300mm floating brake rotor. All of these goals can be accomplished by machining two large spacers to sandwich the front hub.
The spacers would be the diameter of the CB550 front hub/disc mating surface and as thick as required to provide clearance for the caliper with '95-'98 Honda CBR600 F3 rotor mounted. Honda CBR600 F3 rotors have a very similar 6 bolt pattern to the CB550 hub and have a substantial offset which will provide some of the clearance needed for the caliper.
Something like these!