While 3 ohm coils provide a higher spark potential (advantageous during periods of low battery voltage), they also draw nearly twice the power from the bike's electrical system. Since the 550 does not make enough power to charge the battery at idle RPM, this means you will deplete the battery quicker with 3 ohm coils. If your riding regime includes city stop and go traffic, you can expect charging issues. If you mostly ride/operate where the RPM's are above 3000, then you may be able to tolerate the increased power draw. Also, you can expect your points to wear out faster, too, as they will heat faster with the increased current demands.
The stock coils from Honda are a very good reliable design hampered with the fact that the ignition leads are not separately replaceable. When these crack and break, then the coils are often replaced for that reason. I've also seen them require replacement after being caressed by a hatchet.
Another advantage to 3 ohm coils is that you can widen the spark plug electrode gap for a more efficient burn, and 3 ohm coils have the capacity to fire the plugs reliably. In the 550 ignition design, the spark gap determines the voltage at the time of the spark jump. As long as the coils can develop this voltage, the ohm rating is unimportant.
Contrary to popular belief, higher spark voltage, by itself, does NOT equate to more power output of the engine. However, if other engine design mods are made (such as higher compression ratios or increased spark gap), then higher spark potential may be required to fully enable those mods.
According to the shop manual, 750 coils are different than 550 coils. 750 coils have 380 turn primaries and 15,000 turn secondaries. Whereas 550 coils have 420 turn primaries and 13,000 turn secondaries. I've not measured them side by side. But, this difference should certainly make the 550 coils read a higher primary resistance than the 750 coils, and draw less power than a the stock 750 coils.
The other ignition difference, 750 and 550, are the spark plug caps. 750's use 5K ohm caps and all the 550's I have came with 10K ohm caps. However, I am not certain this is directly related to the coil selection, the spark plug selection, or a combination of the two factors.
I'm certain you will get reports of using coils from just about any source (with no problems perceived) on the 550. It's your time and money to spend as your wish. But, I am wondering how you determined your existing coils are bad?
Cheers,