I would likely start by disconnecting the battery ground and connecting a test light between the battery and cable. If there is enough of a draw to light the bulb, unplug things like rectifier, stator harness, ign. switch, etc. until the light goes out.
I found a nasty intermittent short where the strain relief(sharp metal thingy) on the ignition switch had bit into the + wire(nicely hidden inside the rubber boot, I might add).
Good luck.