They should just measure it and give you the results. (then you can post them here to find out if its any good
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)
You 'should' have 6 measurements per cylinder, (top, middle, bottom, X-axis, Y-axis)
X-axis usually in line with the pin, Y is thrust face and generally where the wear takes place)
You need to mic. up the pistons to find out what actual clearance you have. (the pistons are undersized, probably around 50.96~97mm)
I normally set smaller Honda's at 0.0015" total clearance when boring (one and a half thousandths, just under 0.04mm)
Tend to do everything up to 70mm bore like that, no problems so far.
CB400f is only 100cc per cyl, (51mm) so you could probably go with 0.0012" total.
PJ