Back to the topic - after few tries with TDC, now I'm seeting my valves little bit different. Which is - looking at the lobe, it should have the same gap all the way, except where is the protrusion to push the rocker. So, for exhaust valve, I will set the inlet valve at it's highest point, an then i know, that ex valve lobe MUST be at the low point. And here I set the gap.
Since on mine CB650 I have better acces to regulation, I do it in the following way. Say, ex valve needs checking. It should have 0,08mm so i put 0,08 feeler under the rocker and turn the crankshaft tugging slightly at the feeler, and there comes a moment when it starts to move. This is the spot where I set the tolerances. IF the 0.08 doesn't move (say, valve is too tight) I will use 0,07 and do it again. If valve is too loose, I will use 0.09 to find the "sweet spot".
I hope, I made myself clear...

This method worked ALWAYS for me.