The carbs seem to be the only change I can see between the 79-80 and the later SOHC models of 650.
The early custom should fit, not sure about how they altered the air box and rubbers, after 1980 they repositioned the battery into the centre of the 650 frame as opposed to having it hang out the right side like mine does.
Also repositioned the rectifier and regulator too but that is no biggie if the loom you get is same model.
There's at least 3 different types of stock exhaust pipes though so watch out for that, 2 into 1's 2 into 2's low level 2 into 1's and then you get into the 4 into 1's.
I know I been looking for a 79 set all over the world!!!