Are you saying you just changed the four individual/lower cables, or you have a complete new cable set from the carbs right up to the throttle grip?
As far as I know, whenever I have disconnected the cables from the slides on my K0 (as though you might be replacing them), there are differences in length for the inner and outer carbs, but it never made any difference what order I connected, or disconnected them in. If I'm not understanding your situation correctly, my apologies.