There are three fuel metering devices/circuits in the carbs. The slow or pilot circuit. The slide needle jet circuit, and the Main jet, which also feeds the slide needle jet.
They each have dominance at certain throttle positions. The main is dominant at 3/4 to WOT, the slide needle is dominant at 1/4 to 3/4. And, the slow circuit is dominant below 1/4 throttle position.
They all have some bleed effects at other throttle positions when not dominant.
The slow circuit is so sensitive that is has it's own fine tune adjustment, that being the Idle Air Bleed Screws. The factory setting in the book assumes the stock air filter and exhaust. Change those and the factory setting is nearly meaningless. You will have to modify this in accordance with the other modifications.
The carb must run a bit rich at idle to compensate for vacuum loss when the throttle is opened and still have enough fuel for engine pick up. But, it should NOT be so rich as to soot up the center insulator on the spark plugs.
A restrictive air filter can make all throttle positions run richer. Are your pods clean?
A "Bench synch" is NOT good enough to fine tune the jetting on carbs. You MUST do a vacuum sync. This alone may stop your "surging" But, it won't cure sooty plugs. And, choke will only make them more sooty.
You must also learn or relate what position your slide needles are set.
I'll bet your fuel mileage sucks.
You can check here to see what Honda thought the correct jetting was with the stock components:
http://www.motorcycleproject.com/motorcycle/text/specs.htmlYou'll have to identify your carb casting number, though. (JN = Jet Needle position.)
You will likely have to start with "plug chops" at WOT to determine the main jet size. Then continue the plug chop tests at 1/2 throttle position. Using clean plugs. And then finding the correct Idle Air Bleed Screw setting based on throttle response under power from low RPM. When you can do up to 1/2 total throttle position changes and get brisk acceleration, you have it right. Do not expect to snap the throttle open from idle and have the engine pick up. If you can, then expect the spark plugs to soot up while idling.
Lastly, the slide needle and slide needle jet can rub on each other, causing wear. The resulting change in dimension on either part can allow more fuel delivery and rich conditions. When you have the carbs apart, check for this.
Cheers,