Thank you Bill, Larry and Tom you've all been very helpful. Larry, I'm assuming I might as well replace all the clutch plates while I'm in there, is that a fair assumption? I would think the plates all affect each other; if the steel plates are warped they probably affect the fiber plates. Do you have a full set or just the fiber plates?
Bill thanks for the explanation on the clutch basket, that will make more sense when I take it apart but looking at the service manual I can visualize what you're explaining. I will look closely for any notches and smooth them very carefully. I just rebuilt the top end last week, so I got a full engine rebuild gasket set. I think the gasket for the right crankcase cover should be in there, but I don't think the kick starter seal would be in the set. I guess I'll pick up one of those, I want to be prepared so I can try to do this without getting hung up.
Tom, those are some helpful tips. I wouldn't have known to soak the friction plates over night, I'd assume you need to coat them with oil, but I didn't know it would have to soak. I like your idea to replace the phillip head bolts with allen heads. The phillip head is so prone to stripping, it seems like a great idea to replace all the bolts with allen head bolts. If I was doing a full rebuild I'd definitely consider that. Then maybe an impact driver wouldn't be as necessary.