OK, I finished cleaning out the carbs installed them and fired the bike up.. and it runs. It runs much better than it did before. It sounded like it was missed a little on the 3rd cylinder, but considering I hadn't adjusted the valves or synced the carbs or checked the timing it was running pretty well.
Next I thought I would adjust the valve clearances. After reading about it on HondaHobby, the Haynes manual, the Honda cb750 manual, the Owners Manual, salocal and various forum posts I adjusted the valves. Most of the valves were already very close.
I Then adjusted the cam according to this
http://forums.sohc4.net/index.php?topic=38561.msg437589 but I didn't feel the tensioner release at all. Sure enough when I started the bike the engine is making way more noise then before. I'm assuming it's the cam chain so either I did it wrong or the tensioner is stuck. I'll pull it off tomorrow and either get it working or order a new one.
I also got all the stuff I ordered from z1 and one of the items was their allen head bolt set so I replaced all the bolts on the alternator cover and the gear shift cover. I had to use my hand impactor for most of them and I stripped on so I had to drill the head off and remove the alternator cover to remove the bolt, but that all worked out.
Well that's all for now, tomorrow I'll tackle the cam chain tensioner.