There was a European CB500 K3 with PD style carbs, according to the shop manual. They had a smaller air jet (#120 instead of #130), different slide needles profiles with a different setting and the #42 slow jet. They still had #90 mains. (See pg 178 of the Honda shop manual.) I've no idea if they were stamped with the 46 and a letter for the set up config.
It does make sense that with the lower displacement, the engine would suck a bit less on the carbs, necessitating a fuel metering change of some sort. I've no direct experience with your set up, though.
Cheers,