Stock points draw power through 195 degrees of crank rotation for each coil. This means that coil draws power 54% of the time with points.
A 5 ohm coil @12.8V draws 2.56 Amps, or 32.8 watts. There are two coils, so that's 65.5 watts drawn 54% of the time for an average draw of 35.4 watts.
You selected 3.5 ohm coils and a dyna S, right?
A 3.5 ohm coil @12.8V draws 3.66 Amps, or 46.8 watts. There are two coils, so that's 93.6 watts drawn 87% of the time (see note*) for an average draw of 81.4 watts.
*Note: I used Marks' (Hondaman) analysis as a basis for calculating Dyna -s On time, from his measurement of 27% of the points off time :
http://forums.sohc4.net/index.php?topic=29545.msg304549#msg304549Points off time = 165 degrees of crank rotation. 27% of 165 is 45.55 degrees crank rotation out of 360, meaning on time is 314.45 degrees of crank rotation. 314.45/360 equals an 87.3% duty cycle on time.
I was under the impression that the CBR coils were 2.5 ohms, not 3.5 ohms (which would make the calculation much worse from a power draw perspective. Have you actually measured your new coil's primary ohms?
I hope you don't spend much time idling or below 2500 RPM while in operation, particularly with your headlight on, as your battery will deplete steadily till it can't spark the plugs anymore.
Cheers,