When i ride the bike and shift lazily it shifts just fine, when i am giving it any kind f decent throttle it will miss shift, and will grind trying to go into gear. Also when the clutch is disengaged i get a knocking sound. When you pull the clutch in though it goes away. I have only had the bike on the road for a short while and it has done this ever since i got it running.
When i go to time the thing, i can not see the timing mark, no matter which wire i put it on, i can go through the entire adjustment and not see the timing mark, i can however see the advanced mark. The bike does idle kind of high, about 1,000rpm and maybe a little over. I have tried rotating the engine 180* and putting the points back on, no change. Also on my timing light i have a tach and it is all over the place, and not near what the tach on the bike is reading.
She is only really running on 3 cylinders there is a week spark on #4. (So a new coil).