The pulse coils are under a cover on the right side of the bike, I think. There should two yellow and two blue wires going there.
The wire diagram shows these wires going to your spark units. You can probably disconnect at the spark unit and measure the resistance of the wires and the coils from that location. Take a cold measurement across the yellow wires, blue wires (disconnected from the spark unit). And then when it's is hot and won't start take another measurement then. If there is a big change in resistance, you probably found the problem.
I'm assuming you have already checked for spark both when the engine is cold and when the engine is hot. If there is no spark difference with heat, probably no need to measure the pulse coils.