So should I just bleed it a bunch more times or remove the resevoir cap and let the bubbles rise?
When the lever is released, a piston moves back and uncovers a pressure relief hole near the outlet of the master. This is where air can be released into the reservoir under the cap. If you can get the bubbles to collect at that point, gentle pressure and very short stokes on the lever will push air out those holes, replacing it with fluid. You need to position the bike/hoses, components to allow those bubbles to collect at that master cylinder exit hole (it is small). You don't even have to take off the cap. Just arrange the the brake system so that the bubbles can collect at an exit point. I have bled the entire SOHC4 front brake in this manner, without ever opening the bleeder valve at the caliper, and gotten a rock hard lever. I did have to wait for the bubbles to collect overnight, though.
I can't see the physical changes/arrangement of the hydraulic system of your bike. You are going to have to figure out where the pockets of air are trapped, possibly at banjos, and either crack them open there to push out the air at that junction, or tilt them to get the air into the main passageways. Clearly doing more of what you already done isn't getting the job done. Got to change your technique. And, if you understand that bubbles rise until they are trapped, you can figure out where the air is and force it out.
It's an adventure...
Cheers,