I'll confess I have never used plastigage, but that sequence doesn't sound correct to me. I believe you install the bottom shell, then the crank (or cam or whatever), then the plastigage, then the cap with the bearing shell in place. Torque. Unbolt and remove and measure the width of the plastigage. The 'number" you get will be the total (diameter)clearance - which is what everyone uses - not the clearance per side (radius) that is generally not referenced.
But, I could be wrong -
Kenolds