The F model carbs have smaller mains than the others; 98 vs 100. The Pods reduce carb throat vacuum, which is what pulls the fuel through the jets. Less vacuum, less fuel, lean mixture.
You can either massage the carb internals to get more fuel from them, or go back to the stock air box.
I use the UNI NU-4055 air filter instead of the stock paper, to reduce filter maintenance costs, btw.