It sounda like your problem is in your ignition system,worry about charging system after you get running,make sure battery is 12v +,and replace or check those fuses,red hot all the time 12v,blk is switched hot ,12v w/key on,make sure you have 12v to switch,,key on check to find where you lose the 12v after ignition switch,check your grounds also.As someone said very easy to bypass switch,hook red to blk.do you still have kill switch,12v @ coils?,stock pts plate? Check your wire connectors in headlight ,Good Luck,Bill