Stock cables and brake line can be used with drag bars, but you have to get creative with the routing, especially with the throttle/clutch cables, because there can't be any sharp bends in the line. It's much easier (and more expensive) to do it with new shorter cables, but quicker, because you don't have to wait for shipping, (and cheaper) to do it with existing cables.
I recommend getting shorter cables and brake line, but I've done it both ways with success so can't make that decision for you.
As for the idle speed issue:
Put the air box back on before deciding if there really is a problem or not. If you're still having the same problem after that, then go looking for the solution.