it sounds like you indeed have a short. are there any parts of your bike (lighting, firing, etc.) that have never worked properly? if so, this may be the area of the short. check there first before going over the whole electrical system.
also... this may sound moronic, but when i first got a new battery for my bike, i thought it was a 6 volt system due to the size of the battery. i just couldn't figure out why the charge i was putting on the battery was soooo weak.
![Grin ;D](http://forums.sohc4.net/Smileys/default/grin.gif)
then i flipped the charger over to 12V and VOILA!!! i felt like a total moron.
make sure your battery and charger are not resting on the ground. sit them up on boxes or chairs or something.
make sure your ignition switch is OFF.
some of these types of batteries, if they have a rough time early on with charging, they can reverse polarity. i'm sure there are posts on here somewhere about what to do if the battery is reversing polarity. if not, google it. there are times when you have to reverse your leads to get a good charge. crazy, i know, but i've heard it works.
![Tongue :P](http://forums.sohc4.net/Smileys/default/tongue.gif)