First advice: pull those transmission shafts out and submerge them completely in oil, then reinstall. There will not be any oil in the shafts for over 1 full minute after startup, and you can damage the bearings during that time. Also be sure to dose the kickstarter gear bearing with lots of oil, as it drives the oil pump from the moment the engine starts running.
Same story fo the shifter drum and each shift fork, they must be wet.
If you wish to pretest the shifting action, install the mainshaft on the lower case with the countershaft bearing in place, and go through the motions while spinning either the mainshaft or the final drive sprocket. Then you can install teh mainshaft back into the upper half. "Clamshell" from the front to the back when assembling, so you can watch the center fork lay into the groove last. Then hand-shift through the gears while turning the output shaft before you start installing bolts, to make sure all forks are in the right places. Then start with the crankshaft bolts, then bolt the smaller 6mm bolts from the center of the cases outward, middle to front and back. Install the three 8mm bolts/nuts across the back last.