First, the valve seats:
1. Why? Are they burned up?

They can normally be recut up to 3 times before the valves run out of margin.
2. Head nuts: If the nuts are used, and the sealing washers, too, but the studs are new, the torque needs to be at the maximum number (15.2 ft-lbs, 16 would be OK with those HD studs). Don't use a "click" type torque wrench: use a beam torsion type. Even though I have a complete set of high-quality "clickers" myself, I find that when they have "clicked" and I put the beam on them, they are ALWAYS too light (even on my car's V-8 head, at 110 ft-lbs). I have also found that, for example, the "click" wrench that maxes out at 20 ft-lbs. is more accurate at 15 ft-lbs than my 45 ft-lb-er (which stands to reason, really...).
Finally, those little 6mm bolts that are buried in the head: it is very difficult to torque the middle ones in particular, and I have found that if they are torqued last, the larger nuts nearby will come loose again.
So, over the years I have come up with a method Honda would hate: torque the head per spec, back everything off 1/2 turn, then torque the small center ones first (90 in-oz), then the large ones, in order, then the outer small ones, then loosen and retorque the small center ones over at the end. Then I check the big ones the next day, just to be sure. I don't generally recommend this to others, unless they are having troubles like yours: I believe (but cannot prove) that it is related to twist in some head castings. It shows up in K0-K2 engines more than in the later ones, in my experience.
The carbon in the head: try dropping the carb needles one notch from where they are now and go down to 7/8 turn on the air screws (I'm presuming your mainjets are 105: if 110 then they need to become 105). This will be a tad lean, but won't hurt anything: it will slightly reduce throttle-snap response for large handfuls of low-end throttle. Use also the X24ES-U sparkplugs or even D7E(S or A suffix). Also try using low-octane fuel: higher octane will quickly foul plugs at city speeds if the plugs are D8E heatrange.