I am very impressed with not only the work that you have done on the bike (wow), but the efficiency with which you have, basically cataloged not only each and every step, but the thought process behind them. Very, very cool.
The only bit of information that I can add, other than "Go on the internet and read everything you can (and then guess)", is a great engine cleaner... Simple Green Heavy Duty BBQ Cleaner. It's an eco-friendly cleaner, non-caustic that goes on like Scrubbing Bubbles, in a thick expanding foam. Cuts that baked on engine oil and has most of it dripping off. A little scrub with a brush and rinse with water. Works great, easy to use, safe for paint, rubber, electrical wires, etc..