I have built wiring harnesses with my dad for years and dealt with more electrical issues on different cars, trucks, and bikes from mine to my friends. The A1 thing to do is stop running around from this to that and start by checking the ground wires. I can't tell you the absolutely nutty unexplainable things that a bad ground can cause. My '77 750F had the harness grounded between the coil and the frame (two different metals BTW), and the battery is grounded to the frame at the rear motor mount on the right side by the rear foot brake. I'd bet you unknowingly loosened up the ground somewhere and it's not getting good contact. Between the clutch and the carbs, thats right in the area where mine is grounded, that's where I'd begin.