Some things to check, then, presuming it has good sparkplugs:
1. Vacuum leaks (minor) around the carb boot hoses between the carbs and head. Start by tightening the screws when the engine is warmed up. In conjunction with this, make sure the air screws are set at about 1 turn out (Range 7/8 to 1-1/8 turn from their stops). Out is richer, but beyond 1-1/8 turns it will quickly foul the plugs.
2. You'll find the ND X24ES-U plugs work better than the NGK D8EA, especially when cold. Measure the sparkplug cap resistance: they are in pairs (1-4 cylinders on one coil, 2-3 on the other). Those plug caps must be within 500 ohms of each other and less than 8500 ohms apiece or there will be cold-engine imbalance and less-than-ideal idling.
3. Check the valve lash, particularly the intake valves. Too tight on even just one valve, and warmup time becomes very long.
4. Make sure the gap on the Dyna is near the middle of the spec. Dyna gaps vary, depending on which year they were made: old ones use gaps of about 0.015", newer ones use a little more. Your instruction sheet will tell you which yours is: make sure they are both the same gap, or very close to the same, at least.
Also, try a compression check on all 4 cylinders, both cold and warmed up. If there is more than 10% difference in the PSI value cold-to-hot, the valve(s) may be leaking in the low cylinder(s), making for uneven warmup.
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Thanks. Checked number 1- looks good. I'll check on the others.