Sorry, didn't think that the bore would matter on this one. It is to stock specs, just new stuff put in down there.
I will pull the plugs to see which one is oil fouled, it was too late last night and I felt like calling it quits after this happened. All four cylinders are running, bike idles and revs fine. Number one exhaust is much hotter than 3 and four, and I think that it is overly hot, rather than 3 and 4 not being hot enough. There is a slight popping coming from the exhaust, but I am leaning on an exhaust leak on this and don't think it has to do with the faulty cylinder.