Brandon, you have some contact with Soos who I believe has a few 650 motors in bits, can you borrow a set of pick-ups from him to test your theory?
When Kit and I were having problems with our 650's we looked into this and could find no way to test those components.
You might need to borrow a set of ignitors (the square tar filled thingies under your seat)

as well as the spark producing ignition pick-ups.
As they are all plug and go it's not too difficult to swap them around.
If you can borrow some, my suggestion would be to swap only one suspect component at a time so you definitely find out what is causing your grief.
I had to do this with my charging system and after swapping out all the other parts tracked it down to a faulty rotor (which tested perfectly good

).