The answer is in your question, just think about it. A choke reduces airflow so if I reduce airflow my air/fuel ratio "seems" to be richer now.
If richer makes me faster, then I was running lean. I'm not d!cking you around just think about it.
Next step is to isolate where the bike runs better, at what throttle position. I have seen you post other stuff identifying things like this with the carbs so go for it